Dionysus is pretty fab. His depictions show him of both a mature man, an androgynous youth, and even a woman. The literature often speaks of her being womanly or literally translated as “Man-woman”. Dionysus is literally a god of Trans individuals and intersex folk.
Aphrodite has a few tales of inspiring homosexual relationships as well as hetetrosexual ones. She is a goddess of all love after all~ In the poetry of Sappho, she is a patron goddess of various other sexual orientations, especially female homosexuality.
To name a few others (not all deities, but definitely worth looking at): Aphroditus, Hermaphroditus, Erotes. Caeneus is a trans male deity.
I don’t know too much about Shintoism, but Inari is depicted in various ways and various genders.
Enki, a supreme god from Babylon, is a god very accepting towards androgynous and nonbinary individuals. There is even a myth of him wanting to create a “third gender” for these individuals.
Innana also could see a patron of nonbinary and trans individuals as well.
A few that I know of~
Now, not all witches work with deities, but there certainly are polytheistic witches.
I could definitely start an entirely different subject on the importance of LGBTA+ themes in witchcraft, how they are relevant, and how they’ve been around for a while.
